Naming acquisitions
From SpinozaWiki
Once you've gotten your project approved, you will have to set up a scanning protocol that your project's scanning sessions will follow. An important part of this is how you name your acquisitions, since adequate naming will ensure an easy transition to BIDS (see the Data Export page).
Naming convention for exam cards
To enable correct file naming and conversion, exam card names should adhere to the following convention:
<researchgroup>_<project>_<extra info if need be>
E.g.;
Dumoulin_SDVICI
Zwaag_Cerebellum
SC-develop_VASO
- etc.

Naming convention for subjects
To enable correct dicom naming, subject IDs should adhere to one these four formats:
<subjectID>
<subjectID>_<sessionID>
E.g.;
sub01
sub01_ses01
- etc.
Do not use:
<projectID>_<subjectID>
as this will lead to the subject being named projectID and the session subjectID. E.g.
Cerebellum_sub01
results in the subjectID Cerebellum with sessionID sub01
Also, make sure that you use a new subjectID / sessionID for each subject in the project.
Naming convention for sequences (optional, only needed for automatic conversion)
Functional MRI with topup
func-bold_task-<taskname>_run-01
This is run 01 of the taskfmap-epi_acq-<taskname>_run-01
This is the topup sequence that goes with run 01func-bold_task-<taskname>_run-02
This is run 02 of the taskfmap-epi_acq-<taskname>_run-02
This is the topup sequence that goes with run 02
Functional MRI with B0
func-bold_task-<taskname>_run-03
This is run 03 of the taskfmap-B0_acq-<taskname>_run-03
This is the B0 sequence that goes with run 03
Standard Anatomy
run-01_anat-T1w
This is the first T1 weighted anatomicalrun-02_anat-T1w
This is the second T1 weighted anatomicalanat-T2w
This is the only T2 weighted anatomicalanat-T2starw
This is the only T2* weighted anatomical
Fancy anatomy -- tentative (BIDS specification has changed and ReproIn is unclear)
anat-T1map_acq-MEMP2RAGE
This is the only T1 mapanat-T2*map_acq-MEMP2RAGE
This is the only T2* mapanat-MEMP2RAGE_[_echo-<index>]inv-1_part-mag
This is the magnitude map of the first inversion in an MP2RAGEanat-MEMP2RAGE_[_echo-<index>]inv-1_part-phase
This is the phase map of the first inversion in an MP2RAGEanat-MEMP2RAGE_[_echo-<index>]inv-2_part-mag
This is the magnitude map of the second inversion in an MP2RAGEanat-MEMP2RAGE_[_echo-<index>]inv-2_part-phase
This is the phase map of the second inversion in an MP2RAGE