Dicom send: Difference between revisions
From SpinozaWiki
Created page with "This is only needed if dicoms are no longer present on the scanner console, but are available somewhere else. module load dcmtk storescu -v -xs -aec SC-AMC-01 -aet <MY_AE..." |
No edit summary |
||
| Line 3: | Line 3: | ||
storescu -v -xs -aec SC-AMC-01 -aet <MY_AETITLE> apollo.spinozacentre.knaw.nl 6790 --scan-directories --recurse --scan-pattern '*.dcm' <PATH_TO_DICOM_FOLDER> | storescu -v -xs -aec SC-AMC-01 -aet <MY_AETITLE> apollo.spinozacentre.knaw.nl 6790 --scan-directories --recurse --scan-pattern '*.dcm' <PATH_TO_DICOM_FOLDER> | ||
Using the scanner console name (3T-ACQ, 7T-ACQ, 7T-ACQ-MULTIX) for <MY_AETITLE> ensures the data winds up in the correct folder on the AMC side of things. <PATH_TO_DICOM_FOLDER> is the directory containing the .dcm files (recursive). | Using the scanner console name (3T-ACQ, 7T-ACQ, 7T-ACQ-MULTIX) for <MY_AETITLE> ensures the data winds up in the correct folder on the AMC side of things. <PATH_TO_DICOM_FOLDER> is the directory containing the .dcm files (recursive). <br> | ||
It is possible to convert a nifti to enhanced dicom on the minerva command line using xmedcon (https://xmedcon.sourceforge.io/). Dicom headers will be empty though. A subject ID can be added using dcmodify (available in the dcmtk module). See https://support.dcmtk.org/docs/dcmodify.html. | |||
Latest revision as of 10:26, 22 December 2022
This is only needed if dicoms are no longer present on the scanner console, but are available somewhere else.
module load dcmtk storescu -v -xs -aec SC-AMC-01 -aet <MY_AETITLE> apollo.spinozacentre.knaw.nl 6790 --scan-directories --recurse --scan-pattern '*.dcm' <PATH_TO_DICOM_FOLDER>
Using the scanner console name (3T-ACQ, 7T-ACQ, 7T-ACQ-MULTIX) for <MY_AETITLE> ensures the data winds up in the correct folder on the AMC side of things. <PATH_TO_DICOM_FOLDER> is the directory containing the .dcm files (recursive).
It is possible to convert a nifti to enhanced dicom on the minerva command line using xmedcon (https://xmedcon.sourceforge.io/). Dicom headers will be empty though. A subject ID can be added using dcmodify (available in the dcmtk module). See https://support.dcmtk.org/docs/dcmodify.html.